Using: R --vanilla --slave --args SRR182390x_plus.bw SRR182390x_minus.bw G8 /home/dreg2016/gateway/newmodel/asvm.gdm.6.6M.20170828.rdata 15 1 /home/dreg2016/gateway < /home/dreg2016/gateway/run_dREG.R Loading required package: dREG Loading required package: bigWig Loading required package: e1071 Loading required package: rphast Loading required package: snowfall Loading required package: snow Loading required package: data.table Loading required package: rmutil Attaching package: 'rmutil' The following object is masked from 'package:stats': nobs Loading required package: mvtnorm Loading required package: randomForest randomForest 4.6-12 Type rfNews() to see new features/changes/bug fixes. Warning message: replacing previous import 'stats::nobs' by 'rmutil::nobs' when loading 'dREG' Bigwig(plus): SRR182390x_plus.bw Bigwig(minus): SRR182390x_minus.bw Output: G8 dREG model: /home/dreg2016/gateway/newmodel/asvm.gdm.6.6M.20170828.rdata ncores: 15 GPU: 1 1) -------- Checking bigWig files 2) -------- Loading model 3) -------- Peak calling Loading required package: Rgtsvm Attaching package: 'Rgtsvm' The following objects are masked from 'package:e1071': svm, tune.control, tune.svm [e-SVR predict#] X=0[605187,360] kernel=2 degree=3.000000 gamma=0.002778, c0=0.000000 C=1.000000 [e-SVR predict#] Model=0[605187,360] rho=0.520707 [1] "chr1" [1] "chr10" [1] "chr11" [1] "chr12" [1] "chr13" [1] "chr14" [1] "chr15" [1] "chr16" [1] "chr17" [1] "chr18" [1] "chr19" [1] "chr2" [1] "chr20" [1] "chr21" [1] "chr22" [1] "chr3" [1] "chr4" [1] "chr5" [1] "chr6" [1] "chr7" [1] "chr8" [1] "chr9" [1] "chrX" [1] "chrY" [1] "1 of 197" [1] "2 of 197" [1] "3 of 197" [1] "4 of 197" [1] "5 of 197" [1] "6 of 197" [1] "7 of 197" [1] "8 of 197" [1] "9 of 197" [1] "10 of 197" [1] "11 of 197" [1] "12 of 197" [1] "13 of 197" [1] "14 of 197" [1] "15 of 197" R Version: R version 3.4.0 (2017-04-21) snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 726 = 612+60+54 (level 2) ... 90.3 Mbytes of cons cells used (64%) 2281.3 Mbytes of vectors used (14%) [1] "16 of 197" [1] "17 of 197" [1] "18 of 197" [1] "19 of 197" [1] "20 of 197" [1] "21 of 197" [1] "22 of 197" [1] "23 of 197" [1] "24 of 197" [1] "25 of 197" [1] "26 of 197" [1] "27 of 197" [1] "28 of 197" [1] "29 of 197" [1] "30 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 736 = 619+60+57 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2293.1 Mbytes of vectors used (15%) [1] "31 of 197" [1] "32 of 197" [1] "33 of 197" [1] "34 of 197" [1] "35 of 197" [1] "36 of 197" [1] "37 of 197" [1] "38 of 197" [1] "39 of 197" [1] "40 of 197" [1] "41 of 197" [1] "42 of 197" [1] "43 of 197" [1] "44 of 197" [1] "45 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 744 = 622+62+60 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2304.6 Mbytes of vectors used (16%) [1] "46 of 197" [1] "47 of 197" [1] "48 of 197" [1] "49 of 197" [1] "50 of 197" [1] "51 of 197" [1] "52 of 197" [1] "53 of 197" [1] "54 of 197" [1] "55 of 197" [1] "56 of 197" [1] "57 of 197" [1] "58 of 197" [1] "59 of 197" [1] "60 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 752 = 625+64+63 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2316.0 Mbytes of vectors used (14%) [1] "61 of 197" [1] "62 of 197" [1] "63 of 197" [1] "64 of 197" [1] "65 of 197" [1] "66 of 197" [1] "67 of 197" [1] "68 of 197" [1] "69 of 197" [1] "70 of 197" [1] "71 of 197" [1] "72 of 197" [1] "73 of 197" [1] "74 of 197" [1] "75 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 759 = 628+66+65 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2327.5 Mbytes of vectors used (14%) [1] "76 of 197" [1] "77 of 197" [1] "78 of 197" [1] "79 of 197" [1] "80 of 197" [1] "81 of 197" [1] "82 of 197" [1] "83 of 197" [1] "84 of 197" [1] "85 of 197" [1] "86 of 197" [1] "87 of 197" [1] "88 of 197" [1] "89 of 197" [1] "90 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 766 = 632+66+68 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2338.9 Mbytes of vectors used (15%) [1] "91 of 197" [1] "92 of 197" [1] "93 of 197" [1] "94 of 197" [1] "95 of 197" [1] "96 of 197" [1] "97 of 197" [1] "98 of 197" [1] "99 of 197" [1] "100 of 197" [1] "101 of 197" [1] "102 of 197" [1] "103 of 197" [1] "104 of 197" [1] "105 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 774 = 635+68+71 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2350.3 Mbytes of vectors used (16%) [1] "106 of 197" [1] "107 of 197" [1] "108 of 197" [1] "109 of 197" [1] "110 of 197" [1] "111 of 197" [1] "112 of 197" [1] "113 of 197" [1] "114 of 197" [1] "115 of 197" [1] "116 of 197" [1] "117 of 197" [1] "118 of 197" [1] "119 of 197" [1] "120 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 782 = 638+70+74 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2361.8 Mbytes of vectors used (14%) [1] "121 of 197" [1] "122 of 197" [1] "123 of 197" [1] "124 of 197" [1] "125 of 197" [1] "126 of 197" [1] "127 of 197" [1] "128 of 197" [1] "129 of 197" [1] "130 of 197" [1] "131 of 197" [1] "132 of 197" [1] "133 of 197" [1] "134 of 197" [1] "135 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 788 = 641+71+76 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2373.2 Mbytes of vectors used (14%) [1] "136 of 197" [1] "137 of 197" [1] "138 of 197" [1] "139 of 197" [1] "140 of 197" [1] "141 of 197" [1] "142 of 197" [1] "143 of 197" [1] "144 of 197" [1] "145 of 197" [1] "146 of 197" [1] "147 of 197" [1] "148 of 197" [1] "149 of 197" [1] "150 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 795 = 644+73+78 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2384.7 Mbytes of vectors used (15%) [1] "151 of 197" [1] "152 of 197" [1] "153 of 197" [1] "154 of 197" [1] "155 of 197" [1] "156 of 197" [1] "157 of 197" [1] "158 of 197" [1] "159 of 197" [1] "160 of 197" [1] "161 of 197" [1] "162 of 197" [1] "163 of 197" [1] "164 of 197" [1] "165 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 802 = 646+74+82 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2396.1 Mbytes of vectors used (15%) [1] "166 of 197" [1] "167 of 197" [1] "168 of 197" [1] "169 of 197" [1] "170 of 197" [1] "171 of 197" [1] "172 of 197" [1] "173 of 197" [1] "174 of 197" [1] "175 of 197" [1] "176 of 197" [1] "177 of 197" [1] "178 of 197" [1] "179 of 197" [1] "180 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 809 = 649+76+84 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2407.6 Mbytes of vectors used (15%) [1] "181 of 197" [1] "182 of 197" [1] "183 of 197" [1] "184 of 197" [1] "185 of 197" [1] "186 of 197" [1] "187 of 197" [1] "188 of 197" [1] "189 of 197" [1] "190 of 197" [1] "191 of 197" [1] "192 of 197" [1] "193 of 197" [1] "194 of 197" [1] "195 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 817 = 652+78+87 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2419.0 Mbytes of vectors used (16%) [1] "196 of 197" [1] "197 of 197" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 818 = 652+78+88 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2404.1 Mbytes of vectors used (20%) snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 842 = 663+79+100 (level 2) ... 65.3 Mbytes of cons cells used (11%) 2205.8 Mbytes of vectors used (36%) chr start end no min max mean sum stdev count 1 chr1 13350 13601 1 0.038112 0.09779 0.06230 0.3115 0.02419 5 2 chr1 16250 16601 2 0.020190 0.19298 0.11809 0.9447 0.06437 8 3 chr1 28550 28801 3 0.005364 0.20706 0.10554 0.5277 0.07615 5 4 chr1 82000 82151 4 0.008401 0.13160 0.05644 0.2258 0.05539 4 5 chr1 113900 114101 5 0.033638 0.14904 0.08396 0.3358 0.04835 4 6 chr1 115500 116551 6 0.016772 0.17145 0.08102 1.1343 0.05182 14 ===== chr1 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 870 = 680+84+106 (level 2) ... 560.2 Mbytes of cons cells used (65%) 2772.1 Mbytes of vectors used (26%) ===== chr10 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 875 = 684+84+107 (level 2) ... 576.3 Mbytes of cons cells used (67%) 3188.0 Mbytes of vectors used (37%) ===== chr11 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 882 = 689+84+109 (level 2) ... 582.7 Mbytes of cons cells used (68%) 3195.2 Mbytes of vectors used (37%) ===== chr12 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 890 = 694+86+110 (level 2) ... 590.5 Mbytes of cons cells used (69%) 3205.8 Mbytes of vectors used (37%) ===== chr13 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 892 = 695+86+111 (level 2) ... 598.2 Mbytes of cons cells used (58%) 3191.3 Mbytes of vectors used (37%) ===== chr14 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 895 = 697+86+112 (level 2) ... 600.8 Mbytes of cons cells used (58%) 3197.6 Mbytes of vectors used (37%) ===== chr15 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 898 = 699+86+113 (level 2) ... 605.0 Mbytes of cons cells used (59%) 3207.0 Mbytes of vectors used (37%) ===== chr16 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 901 = 701+86+114 (level 2) ... 609.7 Mbytes of cons cells used (59%) 3214.6 Mbytes of vectors used (38%) ===== chr17 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 907 = 705+87+115 (level 2) ... 615.5 Mbytes of cons cells used (60%) 3228.9 Mbytes of vectors used (38%) ===== chr18 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 909 = 706+87+116 (level 2) ... 623.0 Mbytes of cons cells used (60%) 3215.6 Mbytes of vectors used (38%) ===== chr19 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 916 = 710+88+118 (level 2) ... 625.3 Mbytes of cons cells used (60%) 3236.1 Mbytes of vectors used (31%) ===== chr2 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 923 = 714+89+120 (level 2) ... 633.7 Mbytes of cons cells used (61%) 3272.3 Mbytes of vectors used (32%) ===== chr20 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 925 = 715+89+121 (level 2) ... 644.2 Mbytes of cons cells used (62%) 3245.5 Mbytes of vectors used (32%) ===== chr21 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 926 = 715+89+122 (level 2) ... 647.9 Mbytes of cons cells used (63%) 3239.0 Mbytes of vectors used (32%) ===== chr22 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 928 = 716+89+123 (level 2) ... 649.9 Mbytes of cons cells used (63%) 3244.9 Mbytes of vectors used (32%) ===== chr3 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 934 = 721+89+124 (level 2) ... 653.1 Mbytes of cons cells used (63%) 3280.2 Mbytes of vectors used (32%) ===== chr4 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 938 = 724+89+125 (level 2) ... 661.9 Mbytes of cons cells used (64%) 3279.8 Mbytes of vectors used (32%) ===== chr5 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 942 = 727+89+126 (level 2) ... 667.9 Mbytes of cons cells used (65%) 3290.2 Mbytes of vectors used (32%) ===== chr6 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 949 = 732+90+127 (level 2) ... 674.8 Mbytes of cons cells used (65%) 3308.7 Mbytes of vectors used (32%) ===== chr7 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 955 = 736+91+128 (level 2) ... 684.8 Mbytes of cons cells used (66%) 3317.4 Mbytes of vectors used (32%) ===== chr8 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 959 = 739+91+129 (level 2) ... 693.1 Mbytes of cons cells used (67%) 3311.3 Mbytes of vectors used (32%) ===== chr9 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 963 = 742+91+130 (level 2) ... 698.7 Mbytes of cons cells used (68%) 3314.2 Mbytes of vectors used (32%) ===== chrX [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 966 = 744+91+131 (level 2) ... 704.3 Mbytes of cons cells used (68%) 3314.9 Mbytes of vectors used (32%) ===== chrY [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 967 = 744+91+132 (level 2) ... 709.0 Mbytes of cons cells used (69%) 3296.7 Mbytes of vectors used (32%) min_score= 0.0633 [,1] [,2] [,3] [,4] [,5] [1,] 0.009447 0.009152 0.008837 0.008394 0.007839 [2,] 0.009152 0.009447 0.009152 0.008837 0.008394 [3,] 0.008837 0.009152 0.009447 0.009152 0.008837 [4,] 0.008394 0.008837 0.009152 0.009447 0.009152 [5,] 0.007839 0.008394 0.008837 0.009152 0.009447 snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster There were 50 or more warnings (use warnings() to see the first 50) 4) -------- outputting result G8.dREG.infp.bed.gz G8.dREG.infp.bed.gz.tbi G8.dREG.infp.bw G8.dREG.log G8.dREG.peak.full.bed.gz G8.dREG.peak.full.bed.gz.tbi G8.dREG.peak.prob.bed.gz G8.dREG.peak.prob.bed.gz.tbi G8.dREG.peak.prob.bw G8.dREG.peak.score.bed.gz G8.dREG.peak.score.bed.gz.tbi G8.dREG.peak.score.bw G8.dREG.raw.peak.bed.gz G8.dREG.raw.peak.bed.gz.tbi Result: G8.tar.gz Done!