Using: R --vanilla --slave --args SRR1105736.7.plus.bw SRR1105736.7.minus.bw GH /home/dreg2016/gateway/newmodel/asvm.gdm.6.6M.20170828.rdata 15 1 /home/dreg2016/gateway < /home/dreg2016/gateway/run_dREG.R Loading required package: dREG Loading required package: bigWig Loading required package: e1071 Loading required package: rphast Loading required package: snowfall Loading required package: snow Loading required package: data.table Loading required package: rmutil Attaching package: 'rmutil' The following object is masked from 'package:stats': nobs Loading required package: mvtnorm Loading required package: randomForest randomForest 4.6-12 Type rfNews() to see new features/changes/bug fixes. Warning message: replacing previous import 'stats::nobs' by 'rmutil::nobs' when loading 'dREG' Bigwig(plus): SRR1105736.7.plus.bw Bigwig(minus): SRR1105736.7.minus.bw Output: GH dREG model: /home/dreg2016/gateway/newmodel/asvm.gdm.6.6M.20170828.rdata ncores: 15 GPU: 1 1) -------- Checking bigWig files 2) -------- Loading model 3) -------- Peak calling Loading required package: Rgtsvm Attaching package: 'Rgtsvm' The following objects are masked from 'package:e1071': svm, tune.control, tune.svm [e-SVR predict#] X=0[605187,360] kernel=2 degree=3.000000 gamma=0.002778, c0=0.000000 C=1.000000 [e-SVR predict#] Model=0[605187,360] rho=0.520707 [1] "chr1" [1] "chr10" [1] "chr11" [1] "chr12" [1] "chr13" [1] "chr14" [1] "chr15" [1] "chr16" [1] "chr17" [1] "chr18" [1] "chr19" [1] "chr2" [1] "chr20" [1] "chr21" [1] "chr22" [1] "chr3" [1] "chr4" [1] "chr5" [1] "chr6" [1] "chr7" [1] "chr8" [1] "chr9" [1] "chrX" [1] "chrY" [1] "1 of 234" [1] "2 of 234" [1] "3 of 234" [1] "4 of 234" [1] "5 of 234" [1] "6 of 234" [1] "7 of 234" [1] "8 of 234" [1] "9 of 234" [1] "10 of 234" [1] "11 of 234" [1] "12 of 234" [1] "13 of 234" [1] "14 of 234" [1] "15 of 234" R Version: R version 3.4.0 (2017-04-21) snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 346 = 248+44+54 (level 2) ... 90.3 Mbytes of cons cells used (64%) 2358.8 Mbytes of vectors used (16%) [1] "16 of 234" [1] "17 of 234" [1] "18 of 234" [1] "19 of 234" [1] "20 of 234" [1] "21 of 234" [1] "22 of 234" [1] "23 of 234" [1] "24 of 234" [1] "25 of 234" [1] "26 of 234" [1] "27 of 234" [1] "28 of 234" [1] "29 of 234" [1] "30 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 356 = 253+46+57 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2370.6 Mbytes of vectors used (14%) [1] "31 of 234" [1] "32 of 234" [1] "33 of 234" [1] "34 of 234" [1] "35 of 234" [1] "36 of 234" [1] "37 of 234" [1] "38 of 234" [1] "39 of 234" [1] "40 of 234" [1] "41 of 234" [1] "42 of 234" [1] "43 of 234" [1] "44 of 234" [1] "45 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 363 = 257+46+60 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2382.1 Mbytes of vectors used (15%) [1] "46 of 234" [1] "47 of 234" [1] "48 of 234" [1] "49 of 234" [1] "50 of 234" [1] "51 of 234" [1] "52 of 234" [1] "53 of 234" [1] "54 of 234" [1] "55 of 234" [1] "56 of 234" [1] "57 of 234" [1] "58 of 234" [1] "59 of 234" [1] "60 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 370 = 260+48+62 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2393.5 Mbytes of vectors used (15%) [1] "61 of 234" [1] "62 of 234" [1] "63 of 234" [1] "64 of 234" [1] "65 of 234" [1] "66 of 234" [1] "67 of 234" [1] "68 of 234" [1] "69 of 234" [1] "70 of 234" [1] "71 of 234" [1] "72 of 234" [1] "73 of 234" [1] "74 of 234" [1] "75 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 378 = 263+50+65 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2404.9 Mbytes of vectors used (16%) [1] "76 of 234" [1] "77 of 234" [1] "78 of 234" [1] "79 of 234" [1] "80 of 234" [1] "81 of 234" [1] "82 of 234" [1] "83 of 234" [1] "84 of 234" [1] "85 of 234" [1] "86 of 234" [1] "87 of 234" [1] "88 of 234" [1] "89 of 234" [1] "90 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 386 = 266+52+68 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2416.4 Mbytes of vectors used (14%) [1] "91 of 234" [1] "92 of 234" [1] "93 of 234" [1] "94 of 234" [1] "95 of 234" [1] "96 of 234" [1] "97 of 234" [1] "98 of 234" [1] "99 of 234" [1] "100 of 234" [1] "101 of 234" [1] "102 of 234" [1] "103 of 234" [1] "104 of 234" [1] "105 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 393 = 269+53+71 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2427.8 Mbytes of vectors used (15%) [1] "106 of 234" [1] "107 of 234" [1] "108 of 234" [1] "109 of 234" [1] "110 of 234" [1] "111 of 234" [1] "112 of 234" [1] "113 of 234" [1] "114 of 234" [1] "115 of 234" [1] "116 of 234" [1] "117 of 234" [1] "118 of 234" [1] "119 of 234" [1] "120 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 400 = 272+55+73 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2439.3 Mbytes of vectors used (15%) [1] "121 of 234" [1] "122 of 234" [1] "123 of 234" [1] "124 of 234" [1] "125 of 234" [1] "126 of 234" [1] "127 of 234" [1] "128 of 234" [1] "129 of 234" [1] "130 of 234" [1] "131 of 234" [1] "132 of 234" [1] "133 of 234" [1] "134 of 234" [1] "135 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 407 = 275+57+75 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2450.7 Mbytes of vectors used (16%) [1] "136 of 234" [1] "137 of 234" [1] "138 of 234" [1] "139 of 234" [1] "140 of 234" [1] "141 of 234" [1] "142 of 234" [1] "143 of 234" [1] "144 of 234" [1] "145 of 234" [1] "146 of 234" [1] "147 of 234" [1] "148 of 234" [1] "149 of 234" [1] "150 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 415 = 278+59+78 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2462.2 Mbytes of vectors used (17%) [1] "151 of 234" [1] "152 of 234" [1] "153 of 234" [1] "154 of 234" [1] "155 of 234" [1] "156 of 234" [1] "157 of 234" [1] "158 of 234" [1] "159 of 234" [1] "160 of 234" [1] "161 of 234" [1] "162 of 234" [1] "163 of 234" [1] "164 of 234" [1] "165 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 421 = 281+59+81 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2473.6 Mbytes of vectors used (14%) [1] "166 of 234" [1] "167 of 234" [1] "168 of 234" [1] "169 of 234" [1] "170 of 234" [1] "171 of 234" [1] "172 of 234" [1] "173 of 234" [1] "174 of 234" [1] "175 of 234" [1] "176 of 234" [1] "177 of 234" [1] "178 of 234" [1] "179 of 234" [1] "180 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 427 = 283+60+84 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2485.1 Mbytes of vectors used (15%) [1] "181 of 234" [1] "182 of 234" [1] "183 of 234" [1] "184 of 234" [1] "185 of 234" [1] "186 of 234" [1] "187 of 234" [1] "188 of 234" [1] "189 of 234" [1] "190 of 234" [1] "191 of 234" [1] "192 of 234" [1] "193 of 234" [1] "194 of 234" [1] "195 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 434 = 286+62+86 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2496.5 Mbytes of vectors used (16%) [1] "196 of 234" [1] "197 of 234" [1] "198 of 234" [1] "199 of 234" [1] "200 of 234" [1] "201 of 234" [1] "202 of 234" [1] "203 of 234" [1] "204 of 234" [1] "205 of 234" [1] "206 of 234" [1] "207 of 234" [1] "208 of 234" [1] "209 of 234" [1] "210 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 442 = 289+64+89 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2507.9 Mbytes of vectors used (16%) [1] "211 of 234" [1] "212 of 234" [1] "213 of 234" [1] "214 of 234" [1] "215 of 234" [1] "216 of 234" [1] "217 of 234" [1] "218 of 234" [1] "219 of 234" [1] "220 of 234" [1] "221 of 234" [1] "222 of 234" [1] "223 of 234" [1] "224 of 234" [1] "225 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 450 = 292+66+92 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2519.4 Mbytes of vectors used (14%) [1] "226 of 234" [1] "227 of 234" [1] "228 of 234" [1] "229 of 234" [1] "230 of 234" [1] "231 of 234" [1] "232 of 234" [1] "233 of 234" [1] "234 of 234" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 452 = 293+66+93 (level 2) ... 90.7 Mbytes of cons cells used (64%) 2517.7 Mbytes of vectors used (18%) snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 467 = 295+68+104 (level 2) ... 63.2 Mbytes of cons cells used (9%) 2318.0 Mbytes of vectors used (32%) chr start end no min max mean sum stdev count 1 chr1 16250 16601 1 -0.004237 0.2127 0.1052 0.7364 0.06597 7 2 chr1 28600 28751 2 0.025584 0.2282 0.1219 0.3657 0.10167 3 3 chr1 139450 139751 3 0.033152 0.2014 0.1164 0.6983 0.05591 6 4 chr1 540350 541051 4 0.006922 0.6681 0.2380 3.5702 0.19457 15 5 chr1 565450 565951 5 0.047942 0.2106 0.1183 1.1832 0.05633 10 6 chr1 566600 568051 6 0.007753 0.3139 0.1560 4.6800 0.09324 30 ===== chr1 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 493 = 310+73+110 (level 2) ... 656.6 Mbytes of cons cells used (61%) 3006.5 Mbytes of vectors used (22%) ===== chr10 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 498 = 314+73+111 (level 2) ... 678.7 Mbytes of cons cells used (63%) 3510.9 Mbytes of vectors used (33%) ===== chr11 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 505 = 319+73+113 (level 2) ... 689.4 Mbytes of cons cells used (64%) 3517.2 Mbytes of vectors used (33%) ===== chr12 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 513 = 324+74+115 (level 2) ... 700.4 Mbytes of cons cells used (65%) 3535.3 Mbytes of vectors used (34%) ===== chr13 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 515 = 325+74+116 (level 2) ... 712.7 Mbytes of cons cells used (66%) 3517.1 Mbytes of vectors used (34%) ===== chr14 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 519 = 328+74+117 (level 2) ... 717.1 Mbytes of cons cells used (67%) 3528.0 Mbytes of vectors used (34%) ===== chr15 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 523 = 330+75+118 (level 2) ... 724.0 Mbytes of cons cells used (67%) 3537.3 Mbytes of vectors used (34%) ===== chr16 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 528 = 334+75+119 (level 2) ... 731.0 Mbytes of cons cells used (68%) 3550.0 Mbytes of vectors used (34%) ===== chr17 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 537 = 340+76+121 (level 2) ... 739.6 Mbytes of cons cells used (69%) 3577.6 Mbytes of vectors used (36%) ===== chr18 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 539 = 341+76+122 (level 2) ... 752.6 Mbytes of cons cells used (58%) 3557.9 Mbytes of vectors used (36%) ===== chr19 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 546 = 345+77+124 (level 2) ... 756.3 Mbytes of cons cells used (59%) 3582.2 Mbytes of vectors used (30%) ===== chr2 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 554 = 350+78+126 (level 2) ... 767.6 Mbytes of cons cells used (59%) 3629.3 Mbytes of vectors used (32%) ===== chr20 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 557 = 352+78+127 (level 2) ... 783.2 Mbytes of cons cells used (61%) 3600.8 Mbytes of vectors used (32%) ===== chr21 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 558 = 352+78+128 (level 2) ... 789.1 Mbytes of cons cells used (61%) 3586.6 Mbytes of vectors used (32%) ===== chr22 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 561 = 354+78+129 (level 2) ... 791.2 Mbytes of cons cells used (61%) 3598.9 Mbytes of vectors used (32%) ===== chr3 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 568 = 359+79+130 (level 2) ... 796.3 Mbytes of cons cells used (62%) 3644.4 Mbytes of vectors used (32%) ===== chr4 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 573 = 363+79+131 (level 2) ... 808.9 Mbytes of cons cells used (63%) 3648.0 Mbytes of vectors used (32%) ===== chr5 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 578 = 367+79+132 (level 2) ... 818.8 Mbytes of cons cells used (63%) 3658.5 Mbytes of vectors used (32%) ===== chr6 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 586 = 372+81+133 (level 2) ... 828.9 Mbytes of cons cells used (64%) 3679.5 Mbytes of vectors used (32%) ===== chr7 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 592 = 376+82+134 (level 2) ... 842.3 Mbytes of cons cells used (65%) 3689.2 Mbytes of vectors used (32%) ===== chr8 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 597 = 380+82+135 (level 2) ... 853.4 Mbytes of cons cells used (66%) 3692.8 Mbytes of vectors used (32%) ===== chr9 [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 601 = 383+82+136 (level 2) ... 862.8 Mbytes of cons cells used (67%) 3699.6 Mbytes of vectors used (32%) ===== chrX [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 604 = 385+82+137 (level 2) ... 871.4 Mbytes of cons cells used (68%) 3693.6 Mbytes of vectors used (32%) ===== chrY [1] "1 of 15" [1] "2 of 15" [1] "3 of 15" [1] "4 of 15" [1] "5 of 15" [1] "6 of 15" [1] "7 of 15" [1] "8 of 15" [1] "9 of 15" [1] "10 of 15" [1] "11 of 15" [1] "12 of 15" [1] "13 of 15" [1] "14 of 15" [1] "15 of 15" snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster Garbage collection 605 = 385+82+138 (level 2) ... 876.8 Mbytes of cons cells used (68%) 3673.9 Mbytes of vectors used (32%) min_score= 0.07263 [,1] [,2] [,3] [,4] [,5] [1,] 0.011252 0.01095 0.01066 0.01023 0.009692 [2,] 0.010952 0.01125 0.01095 0.01066 0.010233 [3,] 0.010656 0.01095 0.01125 0.01095 0.010656 [4,] 0.010233 0.01066 0.01095 0.01125 0.010952 [5,] 0.009692 0.01023 0.01066 0.01095 0.011252 snowfall 1.84-6.1 initialized (using snow 0.4-2): parallel execution on 15 CPUs. Stopping cluster There were 50 or more warnings (use warnings() to see the first 50) 4) -------- outputting result GH.dREG.infp.bed.gz GH.dREG.infp.bed.gz.tbi GH.dREG.infp.bw GH.dREG.log GH.dREG.peak.full.bed.gz GH.dREG.peak.full.bed.gz.tbi GH.dREG.peak.prob.bed.gz GH.dREG.peak.prob.bed.gz.tbi GH.dREG.peak.prob.bw GH.dREG.peak.score.bed.gz GH.dREG.peak.score.bed.gz.tbi GH.dREG.peak.score.bw GH.dREG.raw.peak.bed.gz GH.dREG.raw.peak.bed.gz.tbi Result: GH.tar.gz Done!